Selected Publications

*denotes equal contribution

MMARGE:Motif Mutation Analysis for Regulatory Genomic Elements.

Link VM, Romanoski CE, Metzler D, Glass CK. Nucleic Acids Res. 2018 Jun 9. doi: 10.1093/nar/gky491. PMID: 29893919.

Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.

Link VM, Duttke SH, Chun HB, Holtman IR, Westin E, Hoeksema MA, Abe Y, Skola D, Romanoski CE, Tao J, Fonseca GJ, Troutman TD, Spann NJ, Strid T, Sakai M, Yu M, Hu R, Fang R, Metzler D, Ren B, Glass CK. Cell 2018 May 5. pii: S0092-8674(18)30511-7. doi: 10.1016/j.cell.2018.04.018. PMID: 29779944.

Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells

Hogan NT, Whalen MB, Stolze LK, Hadeli NK, Lam MT, Springstead JR, Glass CK, Romanoski CE. eLIFE. 2017 Jun:eLife.22536

Exploiting genomics and natural genetic variation to decode macrophage enhancers

Romanoski CE, Link VM, Heinz S, Glass CK. Trends Immunology. 2015 Sep;36(9):507-18. PMID26298065; PMC4548828.

Epigenomics: Roadmap for regulation

Romanoski CE, Glass CK, Stunnenberg HG, Wilson L, Almouzni G. Nature. 2015 Feb 19;518(7539):314-6. doi: 10.1038/518314a. No abstract available. PMID:25693562

Environment drives selection and function of enhancers controlling tissue-specific macrophage identities

Gosselin DO*, Link V*, Romanoski CE*, Fonseca GJ, Eichenfield DJ, Spann NJ, Stender JD, Chun HB, Garner H, Geissmann F, Glass CK. Cell. 2014 Dec 4;159(6):1327-40. PMID25480297; PMC4364385

Effect of Natural Genetic Variation on Enhancer Selection and Function

Heinz S*, Romanoski CE*, Benner C, Allison KA, Kaikkonen MU, Orozco LD, Glass CK. Nature. 2013 Nov 28;503(7477):487-92. PMID24121437; PMC3994126

Network for Activation of Human Endothelial Cells by Oxidized Phospholipids: A Critical Role of Heme Oxygenase 1

Romanoski CE, Che N, Yin F, Mai N, Pouldar D, Civelek M, Pan C, Lee S, Vakili L, Yang W, Kayne PS, Araujo JA, Berliner JA, and Lusis AJ. Circulation Research. 2011 Aug 19;109(5):e27-41. PMID21737788; PMC3163234

Systems Genetics Analysis of Gene-by-Environment Interactions in Human Cells

Romanoski CE, Lee S, Kim MJ, Ingram-Drake L., Plaisier CL, Yordanova R, Tilford C, Guan B, He A, Gargalovic PS, Kirchgessner TG, Berliner JA, Lusis AJ. American Journal of Human Genetics. 2010 Mar 12;86, 399-410. PMID20170901; PMC2833388

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